Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
CHOL | rs72632025 | chr4:63654326 | A/G | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs73820352 | chr4:63653807 | T/G | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs7561562 | chr2:176246726 | A/G | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs7588119 | chr2:176243479 | C/T | 1.31E-5 | 20 | 0 | 0 | 26.93 | KM Plot |
CHOL | rs7588225 | chr2:176243599 | T/C | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs76877530 | chr13:82091602 | C/A | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs77195388 | chr2:176252577 | T/A | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs77754194 | chr4:148529361 | T/C | 0.000121 | 19 | 35.9 | 0 | 21.67 | KM Plot |
CHOL | rs77921730 | chr2:176280243 | A/G | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs78407658 | chr9:12243101 | G/C | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs79189105 | chr3:26880179 | A/G | 0.000121 | 19 | 35.9 | 0 | 20.07 | KM Plot |
CHOL | rs9378841 | chr6:4143157 | A/T | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs9378842 | chr6:4143279 | T/C | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs9387035 | chr6:112090613 | C/G | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs9392552 | chr6:4141572 | A/T | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |